PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g12780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 1121aa    MW: 125876 Da    PI: 9.1315
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g12780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-1090126341
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                       W++eE e++++a +++G++ Wk++a  +  +Rt +++ 
   Vang06g12780.1  90 QWSKEELERFYEAYRMYGKD-WKKVAGVVR-NRTTEMVE 126
                      6*****************99.*********.***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.66E-1185134IPR009057Homeodomain-like
PROSITE profilePS5129312.38686137IPR017884SANT domain
SMARTSM007177.3E-687135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-589131IPR009057Homeodomain-like
PfamPF002491.6E-890130IPR001005SANT/Myb domain
CDDcd001677.03E-691125No hitNo description
SMARTSM011356.1E-52619720IPR033471DIRP domain
PfamPF065844.3E-30619719IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1121 aa     Download sequence    Send to blast
LLLSFSSSSI VLQRNRNPMR GTNIVDCGFG FRFNDIRAQW HQQGNLEVLI SGFQVQMILL  60
RKMELIQIKT SNGYQYKYVK KKLTDKLGSQ WSKEELERFY EAYRMYGKDW KKVAGVVRNR  120
TTEMVEALYN MNRREKVQLS VSKDQSHSIA ASDGCLSLLK KRRLDGMVPH AVGKRTPRVP  180
VSYSYKKEYT ENYVSPYRRS LKSTTDANDD EVAHVVALAL TEAAQRGGGS PQVSQSPCRR  240
ADQKPSPVLR WERKQQLSET ARAKLHNLSV DEELLDGSIE SRGADNGEYA RDNSSLIDME  300
GTGTVEVLQK GGKFYRKKER VKNVGNHQLD DGGEACSGTE EGLSCSLKEM VDIEVTNEKL  360
EKFSPKGGRK RNKKLFFGDE TPALNALQTL ADLSLMMPIS TVDSESSIQL KGDRISADKD  420
GKSALPEATL TSHKRHKLKH SVVPEIEVST SKKSKLGKES TKDTNVLSES KEQLPFADAT  480
WKRKRKSVVA NAKLDSCPSG PLKDEALDDE KKPVVKGKHG DQVFTLPKQL KTVKSSESSL  540
CIDQKETGPM AEIPLLNEVS LPTKRSRRKM NLQRTFSAKE KSSDSILKSQ ANKHSDLKEK  600
LSSCLSSNMV RRWFIFEWFY SAIDYPWFAK RELMEYLNHV GLGNIPRLTR VEWSVVRGSL  660
GKPRRLSEHF LRDERQKLAE YRESVRKHYA ELRTGIRDGL PTDLARPLCV GQRVIAIHPK  720
TREIHDGSVL TVDYDKCRIQ FDRPELGVEF VMDIDCMPFN PLDNMPEALR RHIDDRKGSF  780
MPIEPHINGN SHFGGCENHS SPLKVHTSSS ALVMHGKATV ATMDNLCAQA GCVQPCKVTH  840
HQAREADIHA LSELKRALDK KETLLMELRS SNSDILENQN GIECLNDSEV FKKHYATVSD  900
AMLQLRQRNT YRGNSLPPWM KPQTGFSVHD DLPSMLDGSL TQEFGSTVVQ IIKGSRSRAH  960
AMVDAAFKAL TLTKEGEDGF VKIGQALDSI NHQQLASKSR LPVIRSQEQV NANGSFYHVN  1020
NSTCSVSESI TNDPSGAKLH NYSEKFDTEL PSDLITSCVA TLIMIQTCTE RQYPPADVAQ  1080
ILDSAVSSLH PCCPQNLPIY REIQMCMGRI KTQILALIPT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367374GRKRNKKL
2562569TKRSRRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514043.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X3
TrEMBLA0A0L9VJY20.0A0A0L9VJY2_PHAAN; Uncharacterized protein
STRINGGLYMA20G37826.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding